Indeed.
I guess what this scenario throws up is; if a ref makes what he naturally believes to be the correct call, why would he then proceed to second guess himself and opt to call for VAR to intervene?
Part of me feels were essentially in the same place we have been all along; where 9 times out of 10 the ref will trust their own judgement over consulting any secondary officiating; be it lino, 4th official or a video-ref.
Personally, I think the 'status' of the refs need to be addressed; make it all a more open book; publish statements re controversial incidents and alleviate some of the exclusive-responsibility from the refs and establish a better way to implement retrospective punishments.
Then the tech may well be put to far more effective use in the guise of being there to help the ref's rather than over-rule them as the current (or likely revisions to the) rules/implementations suggest.
I think a three challenge rule simular to tennis could work.